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These are the best gluten free morning glory muffins! They’re made in one bowl and happen to be dairy free and refined sugar free. This is the a great snack for kids.

Looking for more delicious, healthy muffin recipes? Try these oatmeal chocolate chip muffins,

two gluten free morning glory muffins stacked on top of each other

What is a Morning Glory Muffin?

Morning glory muffins are made with shredded fresh fruits and veggies and usually include some sort of raisin and nuts. The flavor is a little savory and a little sweet, with spice from the cinnamon.  

The recipe originated from The Morning Glory cafe in Nantucket. The ingredient list is long, but don’t be scared! They’re all things you probably have in your pantry.

Ingredient Notes

Dry ingredients

  • Gluten free flour: you can use white all purpose flour (not gluten free) or you can use a combination of 1 3/4 cups almond flour and 1/2 cup tapioca flour to keep them paleo.
  • Baking soda: this is the leaven in the recipe and reacts with acid in the sugars to help these muffins rise. 
  • Ground cinnamon: this spice is what makes the recipe so cozy. Highly recommend it! You can even add a pinch of ground ginger for more spice.
  • Ground flax: you can omit this all together, but I like it for the fiber and taste!

Wet ingredients

  • Eggs: if you want to keep these vegan you can mix the flax with water to create a few flax eggs. You can also swap the 3 eggs for 3/4 cup of unsweetened applesauce.
  • Coconut sugar: I don’t recommend swapping this ingredient for a liquid sweetener because it will change the consistency of the muffins.
  • Raw honey: I love the sweetness from this ingredient, but you could swap it for maple syrup or more coconut sugar.
  • Coconut oil: this is the fat in the recipe and shouldn’t be forgotten! I use unrefined coconut oil so you don’t end up with any coconut flavor.
  • Almond milk: you can use regular milk or any other non-dairy milk like coconut milk or oat milk.
  • Carrots: you could swap this out for shredded zucchini, just be sure to pat out some of the moisture from the zucchini before adding to the batter.
  • Apples: I recommend shredding the apple yourself! A great sub for this is crushed pineapple from the can!
  • Golden raisins: this is the traditional ingredient used in gluten free morning glory muffins, however, other dried fruit like regular raisins, cherries or cranberries work well. 
  • Optional nuts: some favorites are walnuts or chopped pecans.
gluten free morning glory muffin in the wrapper with a bite taken out

How to Make Gluten Free Morning Glory Muffins

Mix the wet ingredients

  1. Whisk together the eggs, coconut sugar, honey, melted coconut oil, almond milk, vanilla, shredded carrots and shredded apple in a medium bowl.
  2. Next, add all of the dry ingredients to a large bowl then add the wet ingredients to the flour mixture then stir well until just combined, being careful not to over mix. 

Fill muffin tins

  1. Add the raisins to the batter and stir until just combined, being careful not to over mix again.
  2. Divide the batter evenly into the muffin pan, filling each one all the way to the top. We want them to bake high over the rim.

Bake

  1. Bake the muffins in the preheated oven for 5 minutes tat 425°F then reduce the heat to 350°F and bake for another 17-19 minutes or until a toothpick inserted in the center comes out clean. 
  2. Cool in the muffin tins for 5-10 minutes then transfer to a wire rack to cool completely.

FAQs

Are morning glory muffins healthy?

Healthy is a relative term, but by most people’s standards, these muffins are healthy! They’re gluten, dairy and refined sugar free and they’re full of healthy veggies, fruits, fats and fiber. You’ll feel good about starting your day with this recipe!

How many calories in a morning glory muffin?

There are 290 calories in this muffin. If you omit the flax, there are 275 calories in each muffin.

Can you freeze morning glory muffins?

Muffins are a great baked good to store in the freezer. I recommend doubling this recipe and storing a batch for when you need it.

someone picking up a gluten free morning glory muffin with a bite taken out

Expert Tips

  • How to shred the apples and carrots: peel the apple and carrots and use a cheese grater to shred the fruit and veggies.
  • Don’t squeeze liquid out of the apples because you need their moisture for the muffins.
  • Bake the muffins on high for 5 mins to create the dome-like texture then reduce the heat to cook all the way through to create extra high, bakery-style muffins.
  • Don’t over-mix the batter. This can result in a dense muffin texture.

Meal Prep and Storage Instructions

  • To meal prep: I don’t recommend making the batter in advance and waiting to bake them. However, you can prep the ingredients beforehand. Whisk together the dry ingredients, shred the carrots and shred the apples to prep for quick baking.
  • To store: allow the muffins to cool completely then store them in an air tight bag or container at room temperature for 1-2 days. Additionally, store them in the fridge for up to 1 week.
  • To freeze: allow the muffins to cool completely then store them in a freezer bag (we use a reusable bag) for up to 3 months. Thaw them in the fridge overnight and warm them up in the microwave if desired.
two gluten free morning glory muffins on a wood board

If you make this recipe, I’d love for you to give it a star rating  below. You can also tag me on Instagram so I can see it!

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4.68 from 34 votes

Gluten Free Morning Glory Muffins

Prep: 15 minutes
Cook: 23 minutes
Total: 38 minutes
These are the best gluten free morning glory muffins! They're made in one bowl and happen to be dairy free and refined sugar free. This is the a great snack for kids.

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Servings: 12 muffins

Ingredients

  • 2 cups 1:1 gluten free flour see notes for paleo option
  • 2 teaspoons baking soda
  • 1/2 teaspoon salt
  • 2 teaspoons ground cinnamon
  • 1/4 cup ground flax optional
  • 3 large eggs see notes for vegan option
  • 1/2 cup coconut sugar
  • 1/4 cup raw honey
  • 1/2 cup melted coconut oil
  • 1/3 cup almond milk
  • 1 teaspoon pure vanilla extract
  • 2 cups shredded carrots (about 4 large carrots)
  • 1 cup grated apple (about 1 large apple) don’t squeeze juice out
  • 1/2 cup golden raisins or other dried fruit
  • 1/3 cup chopped walnuts optional

Instructions 

  • Preheat the oven to 425°F and line a muffin tin with liners and spray with nonstick spray. Set aside.
  • In a large mixing bowl, combine the gluten free flour, baking soda, ground cinnamon, salt and flax seed (optional). In a separate medium bowl, whisk together the eggs, coconut sugar, honey, melted coconut oil, almond milk, vanilla, carrots and apple.
  • Add the wet ingredients to the dry ingredients and fold together until just combined and all the pockets of flour are gone. Add the raisins and stir until just combined, being careful not to overmix.
  • Divide the batter evenly between the muffin cups all the way to the top. Bake the muffins in the preheated oven for 5 minutes then, with the muffins still in the oven, reduce the heat to 350°F and bake for another 17-19 minutes or until a toothpick inserted in the center comes out clean.
  • Cool in the muffin tins for 5-10 minutes then transfer to a wire rack to cool completely.
Last step! If you make this, please leave a review letting us know how it was!

Notes

  • Paleo option: swap the gluten free flour for 1 3/4 cups almond flour and 1/2 cup tapioca flour.
  • Vegan option: omit the flax in the batter and create 3 flax eggs by mixing 3 tablespoons of flax with 3 tablespoons of water in a separate bowl. You can also swap the eggs for 3/4 cup unsweetened applesauce.
  • To meal prep: Whisk together the dry ingredients, shred the carrots and shred the apples to prep for quick baking.
  • To store: allow the muffins to cool completely then store them in an air tight bag  room temp for 1-2 days or in the fridge for up to 1 week.
  • To freeze: allow the muffins to cool completely then store them in a freezer bag  for up to 3 months. Thaw them in the fridge overnight.

Nutrition

Serving: 1muffin | Calories: 294kcal | Carbohydrates: 41.5g | Protein: 5.5g | Fat: 12.2g | Fiber: 3g | Sugar: 20.7g

Nutrition information is automatically calculated, so should only be used as an approximation.

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Recipe Rating




8 Comments

  1. Lori says:

    5 stars
    These are delicious. I replaced the apple with pureed pineapple rings. I worked very well.

  2. Deb says:

    5 stars
    Very good. Gluten free things don’t always taste good but these muffins taste great!

  3. Miguel says:

    Looooove this recipe, although I do it in a Bundt cake pan and the center comes out raw (but since it’s vegan I don’t mind!) Today I’ll make it in muffins for the first time and I wanted to clear something out. You say that for paleo option is 1 3/4 cups almond flour and 1/2 cup, but the recipe per sé calls for 2 cups of flour. Would the paleo option call for a total of 2 1/4 cups of flour then? Thank you!

    1. Miguel says:

      5 stars
      Sorry I didn’t reviewed it with 5 stars!

    2. Marie says:

      5 stars
      It is the amount she called for, 1 3/4 cups of almond flour and 1/2 cup tapioca starch. I made these with arrowroot instead of tapioca, subbed pineapple for the apple and they turned out great!

  4. Dammit Janet says:

    5 stars
    Fantastic muffins! I omitted the raisins and reduced the oil a little and they were still great! A keeper for sure.

  5. Victoria says:

    5 stars
    These muffins are deeelicious! So moist and hearty. A good gluten/dairy free recipe is hard to find, so I’m super excited to add this to my repertoire. Thank you for sharing!

    1. Molly Thompson says:

      We just made these last weekend and I had the same thoughts! I forgot how much I loved this one!